Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002958.1_882_986_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

882 - 986

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGG|GCTACGGTG

5'SS Class:

weak_major

3'SS Sequence:

GGGTGTCGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAT

U12 Branch Point Sequence:

TGGTCACTAATG

Flanking Amino Acid:

LGALCLAVLLAYGCGQPAVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.5

0.08

1.4

56.9

45.4

Major BPS

74.4

0.61

0.9

73.6

28.6

Major PPT

61.8

0.27

1.1

54.2

45.8

Minor 5ss

-3

4.2

30.5

Minor BPS

48.9

-0.2

58.28

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009069

Chromosome:

PEDO01002958.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009443

365 - 1035

671