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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002983.1_7198_7420_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7198 - 7420
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTTACTGACAT
Flanking Amino Acid:
ALEFLQLHSKINNRELTFWK
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.7
0.58
0.9
74.1
35.7
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
46.6
-0.1
2
66.98
42.7

Associated Gene:

Gene:
CCNG1
Ensembl Gene ID:
ENSAPLG00000014442
Chromosome:
PEDO01002983.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018146
7003 - 45147
38145
ENSAPLT00000017918
6670 - 9810
3141
ENSAPLT00000015054
6252 - 27427
21176
ENSAPLT00000045595
6670 - 27427
20758
ENSAPLT00000038387
6670 - 9810
3141