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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002983.1_7520_7613_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7520 - 7613
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CAGTTCAAAAAT
Flanking Amino Acid:
HCRIMFSKAKPSVLALSIMA
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
73
36.9
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
81.3
0.7
0.8
73.2
37.3
Minor 5ss
40.3
-1.1
3.5
58.3
46.6
Minor BPS
44.2
-0.3
2
58.63
44.2

Associated Gene:

Gene:
CCNG1
Ensembl Gene ID:
ENSAPLG00000014442
Chromosome:
PEDO01002983.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045595
6670 - 27427
20758
ENSAPLT00000038387
6670 - 9810
3141
ENSAPLT00000018146
7003 - 45147
38145
ENSAPLT00000015054
6252 - 27427
21176