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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002983.1_7693_8288_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7693 - 8288
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTTTCCTTATAG
Flanking Amino Acid:
SLIHENLSCERKKYLNFERL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
82.8
0.74
0.8
77.3
31.6
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
69.3
0.47
1.8
76.89
40.3

Associated Gene:

Gene:
CCNG1
Ensembl Gene ID:
ENSAPLG00000014442
Chromosome:
PEDO01002983.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045595
6670 - 27427
20758
ENSAPLT00000038387
6670 - 9810
3141
ENSAPLT00000018146
7003 - 45147
38145
ENSAPLT00000015054
6252 - 27427
21176