Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002990.1_1209_1279_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1209 - 1279

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CCCTTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGCGAC

U12 Branch Point Sequence:

CCGGCAGCGACT

Flanking Amino Acid:

KSPFSVHPKTGRISVPLDLQ

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

1.2

76.2

39.9

Major BPS

41.5

-0.5

1.2

31.2

32.8

Major PPT

84.7

0.78

0.7

79.6

25.9

Minor 5ss

31.7

-2.1

3.1

40.6

45.6

Minor BPS

-1

2.3

47.63

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021525

Chromosome:

PEDO01002990.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027427

21 - 3806

3786