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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002990.1_892_973_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
892 - 973
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TCTGCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TCCTGCTCAGCC
Flanking Amino Acid:
AETEPKRRVRDYKRTSLAPY
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
54.8
44.4
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
79.8
0.67
0.8
73.5
31.5
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
46
-0.3
2.2
58.11
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021525
Chromosome:
PEDO01002990.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027427
21 - 3806
3786