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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01002991.1_981_2561_F

Intron Information:

Intron Rank:
129423
Intron Class:
major
Intron Phase:
Intron Coordinates:
981 - 2561
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.9
79
33.2
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
65.6
0.47
1.6
73.89
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019613
Chromosome:
PEDO01002991.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027082
21 - 4000
3980