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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003003.1_255_354_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
255 - 354
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
CCACCCCCGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGGTTTATTT
Flanking Amino Acid:
ETCHFQAFWQALDENMELL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.7
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
59.6
0.22
1
54.1
30.6
Minor 5ss
33.3
-1.9
3
35.1
41
Minor BPS
49.9
0.07
2.1
74.81
43.2

Associated Gene:

Gene:
EIF3K
Ensembl Gene ID:
ENSAPLG00000023234
Chromosome:
PEDO01003003.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027603
228 - 1298
1071