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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003003.1_422_690_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
422 - 690
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTCAGTGGG
5'SS Class:
weak_major
3'SS Sequence:
CCCCCCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCCTGCTGATTT
Flanking Amino Acid:
IAGFEDSVRKFICHVVGITY
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.4
50.9
46.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
29.5
-2.3
3
32.9
41.8
Minor BPS
46.2
-0.2
2.1
63.99
46.8

Associated Gene:

Gene:
EIF3K
Ensembl Gene ID:
ENSAPLG00000023234
Chromosome:
PEDO01003003.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027603
228 - 1298
1071