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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003014.1_1895_2029_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1895 - 2029
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAAAGG
5'SS Class:
major
3'SS Sequence:
GTTGCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ACTCTGATAACT
Flanking Amino Acid:
DSKGKERQITEEDLQGKTEE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
59.7
45.1
Major BPS
79
0.72
1
69
38.9
Major PPT
81
0.7
0.9
77.2
37
Minor 5ss
31.8
-2.1
3
31.8
42.3
Minor BPS
46.6
-0.1
2.2
68.26
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018877
Chromosome:
PEDO01003014.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043010
392 - 2328
1937