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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003014.1_874_1489_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
874 - 1489
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
TTGGTGCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGGAT
U12 Branch Point Sequence:
AGAGCTGGGAGC
Flanking Amino Acid:
AINVSQKRKYSSVPDVVSLP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
50.1
0
1.4
51.1
44.3
Major PPT
71.1
0.48
1
61.8
44.4
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
34.2
-1.2
2.1
37.31
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018877
Chromosome:
PEDO01003014.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043010
392 - 2328
1937