Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003016.1_1097_2899_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1097 - 2899

Intron Length:

1803

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GTT|GCATGCATG

5'SS Class:

weak_major

3'SS Sequence:

TCTGGTGCTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCAGCAC

U12 Branch Point Sequence:

CCGTCAGCACCA

Flanking Amino Acid:

CTLAASSKPCSCCAR*

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.4

0.1

1.4

58.3

46.2

Major BPS

46.4

-0.2

1.4

53.6

41.6

Major PPT

73.4

0.53

69.3

41.8

Minor 5ss

41.3

-1

62.7

43.2

Minor BPS

-1

2.3

43.88

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025630

Chromosome:

PEDO01003016.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039807

154 - 2916

2763