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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003018.1_647_767_F

Intron Information:

Intron Rank:
143385
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
647 - 767
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTCAGTAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAGGAT
U12 Branch Point Sequence:
GCCTCTAGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.4
61.8
44.4
Major BPS
48.9
-0
1.5
49.1
44.8
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
32.5
-2
2.6
35.2
40.7
Minor BPS
44.7
-0.3
1.7
56.79
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027257
Chromosome:
PEDO01003018.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043141
21 - 1112
1092