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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_100548_100976_R

Intron Information:

Intron Rank:
21
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
100548 - 100976
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
ACCCGCGGAGCAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTTTCCTTAACC
Flanking Amino Acid:
QRAMVTCTYLVALEPHLSDP
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.1
-0
1.3
49.7
42.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
49.7
-0
1.1
42.8
36.7
Minor 5ss
92
1.41
0.9
85.2
32.2
Minor BPS
90
1.24
0.9
90.55
30.7

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323