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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_103224_104198_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103224 - 104198
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
TCTGCTGTGACA
Flanking Amino Acid:
KSVGLFSIFKDRSDNEVEKI
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
68.6
0.42
1.1
64
41.6
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
49.3
-0
2.1
65.32
42

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323