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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_106304_106828_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106304 - 106828
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CTGCGGCTGACG
Flanking Amino Acid:
QKEWEEKLLLFLQETLAAVS
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
71.8
0.49
0.8
65.1
30.6
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
35.4
-1.2
2.5
40.29
44

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323