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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_106882_107185_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106882 - 107185
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
GCTTTCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAAAT
U12 Branch Point Sequence:
GAGGGCAAAAAT
Flanking Amino Acid:
RVPALVEHIEENTEKCLCQK
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
50.5
0.01
1.1
57.3
34.4
Major PPT
73.9
0.54
0.8
65.9
35.9
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
36.1
-0.9
2.1
47.88
44.1

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037027
78796 - 118118
39323
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870