Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_10705_11970_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10705 - 11970

Intron Length:

1266

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

GATTCTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGGGAT

U12 Branch Point Sequence:

GTGTTTGGGATT

Flanking Amino Acid:

SNRILGVKRKIPLMLNDSSS

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

74.7

41.5

Major BPS

56.3

0.16

1.6

57.1

49.4

Major PPT

0.74

0.9

36.8

Minor 5ss

40.3

-1.1

3.1

54.9

42.3

Minor BPS

42.5

-0.5

58.81

39.3

Associated Gene:

Gene:

HSF1

Ensembl Gene ID:

ENSAPLG00000007598

Chromosome:

PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007952

382 - 27314

26933