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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_107890_108017_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107890 - 108017
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCCTTCTGATGC
Flanking Amino Acid:
NANLIRYDLNGNLPSPYALT
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
57.1
42.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
29.1
-2.4
3
36.9
40.3
Minor BPS
42.8
-0.5
1.9
46.83
42.6

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323