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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_108163_108578_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108163 - 108578
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CTCCACCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAC
U12 Branch Point Sequence:
CCGTGCTCCACC
Flanking Amino Acid:
LSTTVDRMNNVLWPYLLEFV
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
44.9
-0.3
1.4
52.1
43.1
Major PPT
73.1
0.52
0.8
65.6
29.9
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
42.3
-0.6
2.3
49.56
47

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323
ENSAPLT00000032986
79249 - 118118
38870