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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_108957_109482_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108957 - 109482
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CGTACCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCTCCCGTACCC
Flanking Amino Acid:
KLPLQDSNDKVKRAVVQVIS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
70.6
0.46
0.9
62.4
34.5
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
46.4
-0.2
2.3
59.23
46

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323