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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_12340_25183_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12340 - 25183
Intron Length:
12844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTGTTCTCAGCT
Flanking Amino Acid:
SMDSKLIAMKHENEALWREV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
68.5
42.2
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
47.6
-0.2
2.5
65.2
40
Minor BPS
60
0.39
1.8
79.85
42.3

Associated Gene:

Gene:
HSF1
Ensembl Gene ID:
ENSAPLG00000007598
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007952
382 - 27314
26933