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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_588_945_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
588 - 945
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAACAC
U12 Branch Point Sequence:
CCCCCCCCAACA
Flanking Amino Acid:
TETEASTADTGKQLVHYTAQ
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
44.5
-0.3
1
46.6
34.6
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
46.1
-0.3
1.9
53.63
44.5

Associated Gene:

Gene:
HSF1
Ensembl Gene ID:
ENSAPLG00000007598
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007952
382 - 27314
26933