Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_68536_72412_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

68536 - 72412

Intron Length:

3877

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGA|GCCCGTTTT

5'SS Class:

weak_major

3'SS Sequence:

GGCACACCTTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTTAT

U12 Branch Point Sequence:

CCTCCCTTATTG

Flanking Amino Acid:

GICFRLAPLTSRAPCPALTL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.6

0.06

1.3

43.3

Major BPS

66.5

0.41

1.1

57.2

40.1

Major PPT

-0.2

1.7

47.6

40.6

Minor 5ss

31.4

-2.1

4.1

45.8

43.4

Minor BPS

53.8

-0

1.7

56.24

45.6

Associated Gene:

Gene:

BOP1

Ensembl Gene ID:

ENSAPLG00000008324

Chromosome:

PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031062

68301 - 77613

9313