About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_73577_74023_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73577 - 74023
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
CTCCACCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTCGCCTCCACC
Flanking Amino Acid:
PPEYLLSEEEKLAWEQQEPA
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
68.6
0.42
0.8
61.6
28.6
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
47
-0.2
2.1
57.93
47.1

Associated Gene:

Gene:
BOP1
Ensembl Gene ID:
ENSAPLG00000008324
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040335
67653 - 77613
9961
ENSAPLT00000031062
68301 - 77613
9313
ENSAPLT00000022763
71610 - 77613
6004
ENSAPLT00000008647
68629 - 77613
8985