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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_74186_74510_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74186 - 74510
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
GCCTCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CGTGTCTCACTG
Flanking Amino Acid:
YLCPRQRKMRVNVDPEDLIP
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
63
36
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
72.3
0.5
0.8
69
31.5
Minor 5ss
25.8
-2.8
3.1
25.9
36.5
Minor BPS
42.4
-0.7
1.9
43.05
43.1

Associated Gene:

Gene:
BOP1
Ensembl Gene ID:
ENSAPLG00000008324
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022763
71610 - 77613
6004
ENSAPLT00000008647
68629 - 77613
8985
ENSAPLT00000040335
67653 - 77613
9961
ENSAPLT00000031062
68301 - 77613
9313