Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_74592_74699_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

74592 - 74699

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAATCAG

5'SS Class:

major

3'SS Sequence:

TCTCCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

GGACCCTCACCC

Flanking Amino Acid:

LQPFPTTQALVYRGHTSLVR

Intron Amino Acid Position:

327

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

63.9

41.9

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

77.4

0.62

0.7

69.1

31.4

Minor 5ss

33.1

-1.9

37.5

41.4

Minor BPS

47.3

-0.2

1.8

55.25

41.9

Associated Gene:

Gene:

BOP1

Ensembl Gene ID:

ENSAPLG00000008324

Chromosome:

PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008647

68629 - 77613

8985

ENSAPLT00000040335

67653 - 77613

9961

ENSAPLT00000031062

68301 - 77613

9313

ENSAPLT00000022763

71610 - 77613

6004