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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_75922_76138_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75922 - 76138
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCCACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
GTGCCCTGACCC
Flanking Amino Acid:
NPTVCLVAVCVEQSVLLVNP
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
62.4
37.7
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
68.3
0.41
0.8
60.8
29
Minor 5ss
30.5
-2.2
3.1
36.8
40.4
Minor BPS
50.1
-0
1.8
61.79
43

Associated Gene:

Gene:
BOP1
Ensembl Gene ID:
ENSAPLG00000008324
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022763
71610 - 77613
6004
ENSAPLT00000008647
68629 - 77613
8985
ENSAPLT00000040335
67653 - 77613
9961
ENSAPLT00000031062
68301 - 77613
9313