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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_76320_76423_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76320 - 76423
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TGATCCGTGACC
Flanking Amino Acid:
GIRLAVQHSKALKQVTWHGK
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
68.9
35.4
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
19.3
-3.5
4
30
43.1
Minor BPS
59
0.26
2.1
71.48
39.8

Associated Gene:

Gene:
BOP1
Ensembl Gene ID:
ENSAPLG00000008324
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008647
68629 - 77613
8985
ENSAPLT00000040335
67653 - 77613
9961
ENSAPLT00000031062
68301 - 77613
9313
ENSAPLT00000022763
71610 - 77613
6004