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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_7720_10607_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7720 - 10607
Intron Length:
2888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTGTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
TTGTGCTTCACC
Flanking Amino Acid:
EHVHGSSPYAASSPAYSGSN
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
88
0.85
0.7
85.4
29.3
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
58
0.23
2.2
73.81
43.4

Associated Gene:

Gene:
HSF1
Ensembl Gene ID:
ENSAPLG00000007598
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007952
382 - 27314
26933