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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_79335_80821_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79335 - 80821
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
CTGCTCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CCCCCCTCATGT
Flanking Amino Acid:
QQVDLDQLISALNLLLKDPV
Intron Amino Acid Position:
1517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
59.7
46.7
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
74.8
0.56
0.8
69
31.5
Minor 5ss
27.7
-2.6
2.7
24
36.8
Minor BPS
42.2
-0.5
2
52.9
48

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323
ENSAPLT00000032986
79249 - 118118
38870