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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_80888_81820_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80888 - 81820
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
AAAACCCTGACG
Flanking Amino Acid:
DIRAAAPMFIGFLVLHVDED
Intron Amino Acid Position:
1495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
73.7
0.53
0.8
65
36.3
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
48.5
-0.2
1.8
52.69
41.2

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323