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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_81924_82130_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81924 - 82130
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGCA
5'SS Class:
major
3'SS Sequence:
GCCTCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCTGCCTGACTC
Flanking Amino Acid:
EFMNNVCKHLMQSYPEMLNR
Intron Amino Acid Position:
1461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.8
36.3
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
70.5
0.46
0.8
61.3
35
Minor 5ss
31.3
-2.1
3.2
35.6
42.2
Minor BPS
46.8
-0.2
1.8
54.19
44.5

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323