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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_82529_83115_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82529 - 83115
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
CCCCCGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTCACCCCAAAT
Flanking Amino Acid:
AIRIRPFFDSEQPDLRQSSI
Intron Amino Acid Position:
1365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.4
54.9
44.4
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
68.6
0.42
0.8
60.7
29.3
Minor 5ss
29.5
-2.3
3.5
32.8
42.6
Minor BPS
48.3
-0
2
71.56
44.5

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323