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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_83305_84986_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83305 - 84986
Intron Length:
1682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTGCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAG
U12 Branch Point Sequence:
TGCCCCACAGCA
Flanking Amino Acid:
GNISSGSPEKVRKHGAKLLA
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
41.6
-0.5
1.4
46.3
37.5
Major PPT
73.6
0.53
0.9
65.6
36
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
43.7
-0.4
2
55.45
42.7

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323