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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_88745_93596_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88745 - 93596
Intron Length:
4852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
CGTGGTGTGACA
Flanking Amino Acid:
SPAPRSLHPCSCAVETLKVM
Intron Amino Acid Position:
1168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
40.1
-0.7
2.3
49.82
42.1

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323