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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_94658_95318_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94658 - 95318
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TGCTCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
GGCACCAAAACA
Flanking Amino Acid:
SLLGSALPFDSHTCAMWRSL
Intron Amino Acid Position:
1047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
76.7
0.6
0.8
69.9
30.9
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
45.8
-0.3
2
54.83
43.2

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037027
78796 - 118118
39323
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870