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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_97021_98132_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97021 - 98132
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TGCCCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
CCAGCGTTAACT
Flanking Amino Acid:
LFHTCHNIAMVVGKRVPPEQ
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
62.2
43.7
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
75.1
0.57
0.8
65.7
36.1
Minor 5ss
30.2
-2.3
3.2
35.3
42.3
Minor BPS
51.2
0.11
2.2
68.01
48.6

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323