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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_98856_99015_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98856 - 99015
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TGTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
GCTCCCCAACGC
Flanking Amino Acid:
DFYLAKLNVSTVVPFYNLGV
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.4
62
44
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
76
0.58
0.8
70
30.9
Minor 5ss
34
-1.8
3.2
39
39.8
Minor BPS
36.8
-1
2.2
44.97
43.3

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037027
78796 - 118118
39323
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870