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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003039.1_99356_100414_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99356 - 100414
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGTT
5'SS Class:
major
3'SS Sequence:
CTTTCCTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GAGCCTGTAATC
Flanking Amino Acid:
GISSDALHKEILYGDTLSAL
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.2
37.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
76.9
0.61
0.7
69.9
31
Minor 5ss
28.6
-2.4
3.8
46
49.3
Minor BPS
46.8
-0.2
2
53.39
38.6

Associated Gene:

Gene:
MROH1
Ensembl Gene ID:
ENSAPLG00000008718
Chromosome:
PEDO01003039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032986
79249 - 118118
38870
ENSAPLT00000025193
78796 - 118118
39323
ENSAPLT00000009137
79249 - 118118
38870
ENSAPLT00000037027
78796 - 118118
39323