About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003052.1_701_835_F


Intron Information:

Intron Rank:
124497

Intron Class:
major

Intron Phase:

Intron Coordinates:
701 - 835

Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTGCGTGTC

5'SS Class:
strong_major

3'SS Sequence:
ATCCCACCCCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTCCAT

U12 Branch Point Sequence:
TCCCTCTCCATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83
0.78
0.9
75.9
33.9

Major BPS
64.7
0.37
1.3
74.7
40

Major PPT
65.6
0.35
0.9
55.3
34.7

Minor 5ss
30.7
-2.2
3.4
43
44.6

Minor BPS
44.1
-0.4
1.9
50.84
40.8

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
PEDO01003052.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 2062
2042