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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003053.1_602_2156_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
602 - 2156
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTGCTTGATT
Flanking Amino Acid:
LNLLERAGFEEVIVITRKEI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.6
0.49
0.8
64.6
36.5
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
73.1
0.81
1.7
90.9
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027525
Chromosome:
PEDO01003053.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041489
21 - 2890
2870