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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003096.1_1779_3461_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1779 - 3461
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
GGCTTTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAG
U12 Branch Point Sequence:
TAGTCCGTAATC
Flanking Amino Acid:
LAIQALKFKLQLSLIEPGPV
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
56.5
0.16
1.6
66
40.9
Major PPT
61.3
0.26
1
57.9
42.1
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
61.1
0.33
2
71.25
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003043
Chromosome:
PEDO01003096.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003079
21 - 5310
5290