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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003110.1_2020_2103_R

Intron Information:

Intron Rank:
145177
Intron Class:
major
Intron Phase:
Intron Coordinates:
2020 - 2103
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCACAC
U12 Branch Point Sequence:
TTGGCCACACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
45
-0.3
1.1
48.6
36.6
Major PPT
80
0.67
0.7
72.3
32.3
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
41.2
-0.8
2.1
48.04
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025533
Chromosome:
PEDO01003110.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044927
58 - 2335
2278