Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003110.1_2143_3598_R

Intron Information:

Intron Rank:

145176

Intron Class:

major

Intron Phase:

Intron Coordinates:

2143 - 3598

Intron Length:

1456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

ATGTCTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

ATGTCTCCCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

84.8

0.86

85.7

34.9

Major PPT

72.5

0.51

0.9

65.8

35.4

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

43.7

-0.5

2.2

58.48

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025533

Chromosome:

PEDO01003110.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022041

2084 - 3781

1698