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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003144.1_26176_27106_R

Intron Information:

Intron Rank:
153981
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
26176 - 27106
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTCTGCT
5'SS Class:
weak_major
3'SS Sequence:
TTGTCGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AACATTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.29
1.3
63.6
40.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.8
0.67
0.9
73.4
37
Minor 5ss
43.3
-0.7
2.9
60.2
44.2
Minor BPS
60.6
0.31
1.3
62.01
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030326
Chromosome:
PEDO01003144.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040262
23932 - 27232
3301
ENSAPLT00000044850
24881 - 27232
2352