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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003154.1_1223_1740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1223 - 1740
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTCCCCGTACCC
Flanking Amino Acid:
PVPRMRPGAPRSVASPPAAG
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
78
33
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
65
0.34
0.9
57
32.4
Minor 5ss
23.6
-3
4.3
40.5
46
Minor BPS
49.1
-0
2.3
67.59
44.2

Associated Gene:

Gene:
CSRNP2
Ensembl Gene ID:
ENSAPLG00000026770
Chromosome:
PEDO01003154.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023182
1077 - 5893
4817