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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003168.1_108_187_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108 - 187
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GCTGTCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
CTGTCCTCACAG
Flanking Amino Acid:
ADLRPPEMTPVSQAPKEQPA
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
72.1
0.5
0.9
64.6
36.6
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
46.6
-0.4
2
52.59
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017897
Chromosome:
PEDO01003168.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019617
25 - 2562
2538