Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003168.1_1965_2085_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1965 - 2085

Intron Length:

121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTACGTGCA

5'SS Class:

major

3'SS Sequence:

TTCGGTGCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCGGT

U12 Branch Point Sequence:

CTGTCTCTCTCC

Flanking Amino Acid:

DPFDPRRLAVAGEDAKIRLW

Intron Amino Acid Position:

299

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

67.9

37.3

Major BPS

29.2

-1.3

4.2

58.2

48.3

Major PPT

72.2

0.5

65.2

41.2

Minor 5ss

-2.1

3.3

38.4

41.8

Minor BPS

34.5

-1.2

3.5

54.05

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017897

Chromosome:

PEDO01003168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019617

25 - 2562

2538

ENSAPLT00000019091

170 - 5100

4931