Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01003168.1_2195_2293_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2195 - 2293

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGCGG

5'SS Class:

major

3'SS Sequence:

TGCTCTCTGCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGACAC

U12 Branch Point Sequence:

CTGCCGTGCACC

Flanking Amino Acid:

SAGGQIAVLELSKPGRLPDT

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

55.4

48.8

Major BPS

-0.2

1.3

52.4

43.3

Major PPT

71.9

0.49

65.3

41.1

Minor 5ss

29.1

-2.4

3.4

38.7

46.4

Minor BPS

40.8

-0.7

2.4

52.22

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017897

Chromosome:

PEDO01003168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019617

25 - 2562

2538

ENSAPLT00000019091

170 - 5100

4931